IL_9RPV_017

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CCGG*CG

Length

6 nucleotides

Bulged bases

9RPV|1|L5|C|340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RPV_017 not in the Motif Atlas

Homologous match to IL_8GLP_017

Geometric discrepancy: 0.076

The information below is about IL_8GLP_017

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_26092.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

29

Unit IDs

9RPV|1|L5|C|339
9RPV|1|L5|C|340
9RPV|1|L5|G|341
9RPV|1|L5|G|342
*
9RPV|1|L8|C|32
9RPV|1|L8|G|33

Current chains

Chain L5

28S rRNA of the collided 80S

Chain L8

5.8S rRNA of the collided 80S

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LL

Large ribosomal subunit protein eL13

Chain LN

60S ribosomal protein L15

Chain Lj

Large ribosomal subunit protein eL37