IL_9RTU_043

3D structure

PDB id

9RTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G(P610L)-GDP-Pi ribosome complex with tRNAs in hybrid state 1 (H1-EF-G(P610L)-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9RTU|1|A|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RTU_043 not in the Motif Atlas

Geometric match to IL_8B0X_107

Geometric discrepancy: 0.0743

The information below is about IL_8B0X_107

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

9RTU|1|A|C|1208
9RTU|1|A|U|1209
9RTU|1|A|G|1210
9RTU|1|A|C|1211
9RTU|1|A|G|1212
9RTU|1|A|A|1213
9RTU|1|A|A|1214
9RTU|1|A|G|1215
*
9RTU|1|A|U|1234
9RTU|1|A|G|1235
9RTU|1|A|G|1236
9RTU|1|A|A|1237
9RTU|1|A|G|1238

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L20