IL_9RTU_171

3D structure

PDB id

9RTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G(P610L)-GDP-Pi ribosome complex with tRNAs in hybrid state 1 (H1-EF-G(P610L)-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RTU_171 not in the Motif Atlas

Geometric match to IL_8B0X_056

Geometric discrepancy: 0.1094

The information below is about IL_8B0X_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9RTU|1|a|C|1303
9RTU|1|a|G|1304
9RTU|1|a|G|1305
9RTU|1|a|A|1306
9RTU|1|a|U|1307
9RTU|1|a|U|1308
*
9RTU|1|a|A|1329
9RTU|1|a|U|1330
9RTU|1|a|G|1331
9RTU|1|a|A|1332
9RTU|1|a|A|1333
9RTU|1|a|G|1334

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S13