IL_9RU7_126

3D structure

PDB id

9RU7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to Kozak mRNA (WT-Kozak)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGUA(PSU)(OMG)*CGAAG

Length

11 nucleotides

Bulged bases

9RU7|1|L5|U|4634, 9RU7|1|L5|PSU|4636

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RU7|1|L5|U|4632
9RU7|1|L5|G|4633
9RU7|1|L5|U|4634
9RU7|1|L5|A|4635
9RU7|1|L5|PSU|4636
9RU7|1|L5|OMG|4637
*
9RU7|1|L5|C|4662
9RU7|1|L5|G|4663
9RU7|1|L5|A|4664
9RU7|1|L5|A|4665
9RU7|1|L5|G|4666

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LW

60S ribosomal protein L24

Chain Ld

60S ribosomal protein L31