IL_9RU7_167

3D structure

PDB id

9RU7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to Kozak mRNA (WT-Kozak)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAUCAA*UGACCACG

Length

14 nucleotides

Bulged bases

9RU7|1|S2|U|361, 9RU7|1|S2|C|399, 9RU7|1|S2|C|400

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RU7|1|S2|U|359
9RU7|1|S2|A|360
9RU7|1|S2|U|361
9RU7|1|S2|C|362
9RU7|1|S2|A|363
9RU7|1|S2|A|364
*
9RU7|1|S2|U|396
9RU7|1|S2|G|397
9RU7|1|S2|A|398
9RU7|1|S2|C|399
9RU7|1|S2|C|400
9RU7|1|S2|A|401
9RU7|1|S2|C|402
9RU7|1|S2|G|403

Current chains

Chain S2

18S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11

Chain SX

40S ribosomal protein S23