IL_9RVC_018
3D structure
- PDB id
- 9RVC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- staphylococcus aureus 70S initiation complex with natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGAUGAAG*CGUAAAA
- Length
- 15 nucleotides
- Bulged bases
- 9RVC|1|A|U|420
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9RVC_018 not in the Motif Atlas
- Homologous match to IL_6CZR_359
- Geometric discrepancy: 0.5503
- The information below is about IL_6CZR_359
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28026.2
- Basepair signature
- cWW-tSH-tWH-cWH-tSS-tHW-tHH-cWW
- Number of instances in this motif group
- 3
Unit IDs
9RVC|1|A|U|417
9RVC|1|A|G|418
9RVC|1|A|A|419
9RVC|1|A|U|420
9RVC|1|A|G|421
9RVC|1|A|A|422
9RVC|1|A|A|423
9RVC|1|A|G|424
*
9RVC|1|A|C|435
9RVC|1|A|G|436
9RVC|1|A|U|437
9RVC|1|A|A|438
9RVC|1|A|A|439
9RVC|1|A|A|440
9RVC|1|A|A|441
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain D
- Small ribosomal subunit protein uS4
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