IL_9RVC_035
3D structure
- PDB id
- 9RVC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- staphylococcus aureus 70S initiation complex with natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAAC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9RVC_035 not in the Motif Atlas
- Homologous match to IL_6CZR_145
- Geometric discrepancy: 0.1134
- The information below is about IL_6CZR_145
- Detailed Annotation
- tSH-tWH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.6
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
9RVC|1|A|C|787
9RVC|1|A|A|788
9RVC|1|A|A|789
9RVC|1|A|A|790
9RVC|1|A|C|791
*
9RVC|1|A|G|807
9RVC|1|A|G|808
9RVC|1|A|U|809
9RVC|1|A|A|810
9RVC|1|A|G|811
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain K
- Small ribosomal subunit protein uS11
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: