IL_9RVC_091

3D structure

PDB id

9RVC (explore in PDB, NAKB, or RNA 3D Hub)

Description

staphylococcus aureus 70S initiation complex with natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCG*CAAUC

Length

8 nucleotides

Bulged bases

9RVC|1|a|C|821, 9RVC|1|a|A|833, 9RVC|1|a|A|834, 9RVC|1|a|U|835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RVC_091 not in the Motif Atlas

Geometric match to IL_9E6Q_032

Geometric discrepancy: 0.0718

The information below is about IL_9E6Q_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89509.3

Basepair signature

cWW-cWW

Number of instances in this motif group

10

Unit IDs

9RVC|1|a|G|820
9RVC|1|a|C|821
9RVC|1|a|G|822
*
9RVC|1|a|C|832
9RVC|1|a|A|833
9RVC|1|a|A|834
9RVC|1|a|U|835
9RVC|1|a|C|836

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain c

Large ribosomal subunit protein uL2

Chain e

Large ribosomal subunit protein uL4

Chain r

Large ribosomal subunit protein uL22