IL_9RVC_164

3D structure

PDB id

9RVC (explore in PDB, NAKB, or RNA 3D Hub)

Description

staphylococcus aureus 70S initiation complex with natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

9RVC|1|a|U|2518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RVC_164 not in the Motif Atlas

Homologous match to IL_7A0S_086

Geometric discrepancy: 0.1154

The information below is about IL_7A0S_086

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.4

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

25

Unit IDs

9RVC|1|a|A|2486
9RVC|1|a|U|2487
9RVC|1|a|C|2488
*
9RVC|1|a|G|2516
9RVC|1|a|G|2517
9RVC|1|a|U|2518
9RVC|1|a|U|2519
9RVC|1|a|U|2520

Current chains

Chain a

23S rRNA

Nearby chains

Chain Y

Transfer RNA; tRNA

Chain l

Large ribosomal subunit protein uL16