IL_9RVC_172
3D structure
- PDB id
- 9RVC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- staphylococcus aureus 70S initiation complex with natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUGAG*CAAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 9RVC|1|a|G|2807
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9RVC_172 not in the Motif Atlas
- Homologous match to IL_7A0S_093
- Geometric discrepancy: 0.0933
- The information below is about IL_7A0S_093
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.4
- Basepair signature
- cWW-tSH-tHW-tHS-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
9RVC|1|a|U|2663
9RVC|1|a|U|2664
9RVC|1|a|G|2665
9RVC|1|a|A|2666
9RVC|1|a|G|2667
*
9RVC|1|a|C|2801
9RVC|1|a|A|2802
9RVC|1|a|A|2803
9RVC|1|a|G|2804
9RVC|1|a|A|2805
9RVC|1|a|U|2806
9RVC|1|a|G|2807
9RVC|1|a|A|2808
9RVC|1|a|G|2809
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain J
- Large ribosomal subunit protein uL13
- Chain d
- Large ribosomal subunit protein uL3
Coloring options: