IL_9SLG_110

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

CUGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9SLG|1|a|U|1213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SLG_110 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.1977

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

9SLG|1|a|C|1210
9SLG|1|a|U|1211
9SLG|1|a|G|1212
9SLG|1|a|U|1213
9SLG|1|a|G|1214
9SLG|1|a|A|1215
9SLG|1|a|A|1216
9SLG|1|a|G|1217
*
9SLG|1|a|U|1236
9SLG|1|a|G|1237
9SLG|1|a|G|1238
9SLG|1|a|A|1239
9SLG|1|a|G|1240

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain p

Large ribosomal subunit protein bL20