IL_9SLG_172

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

9SLG|1|a|U|2693, 9SLG|1|a|U|2694

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SLG_172 not in the Motif Atlas

Homologous match to IL_7A0S_096

Geometric discrepancy: 0.2629

The information below is about IL_7A0S_096

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

9SLG|1|a|U|2691
9SLG|1|a|G|2692
9SLG|1|a|U|2693
9SLG|1|a|U|2694
9SLG|1|a|C|2695
*
9SLG|1|a|G|2722
9SLG|1|a|G|2723
9SLG|1|a|U|2724
9SLG|1|a|A|2725
9SLG|1|a|G|2726

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain m

Large ribosomal subunit protein bL17

Chain o

Large ribosomal subunit protein bL19