IL_9SPF_030

3D structure

PDB id

9SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

9SPF|1|L5|G|748, 9SPF|1|L5|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SPF|1|L5|G|745
9SPF|1|L5|A|746
9SPF|1|L5|A|747
9SPF|1|L5|G|748
9SPF|1|L5|G|749
9SPF|1|L5|U|750
9SPF|1|L5|G|751
9SPF|1|L5|G|752
*
9SPF|1|L5|U|911
9SPF|1|L5|G|912
9SPF|1|L5|U|913
9SPF|1|L5|U|914
9SPF|1|L5|A|915
9SPF|1|L5|C|916
9SPF|1|L5|A|917
9SPF|1|L5|G|918
9SPF|1|L5|C|919

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a