IL_9SPF_194
3D structure
- PDB id
- 9SPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- AG(OMG)GCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SPF_194 not in the Motif Atlas
- Homologous match to IL_9PN5_171
- Geometric discrepancy: 0.0636
- The information below is about IL_9PN5_171
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_11411.4
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 14
Unit IDs
9SPF|1|S2|A|599
9SPF|1|S2|G|600
9SPF|1|S2|OMG|601
9SPF|1|S2|G|602
9SPF|1|S2|C|603
9SPF|1|S2|A|604
9SPF|1|S2|A|605
9SPF|1|S2|G|606
*
9SPF|1|S2|C|636
9SPF|1|S2|U|637
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SC
- 40S ribosomal protein S2
- Chain SJ
- 40S ribosomal protein S9
- Chain Se
- Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein
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