IL_9SPI_029

3D structure

PDB id

9SPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING URIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

9SPI|1|L5|G|748, 9SPI|1|L5|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SPI|1|L5|G|745
9SPI|1|L5|A|746
9SPI|1|L5|A|747
9SPI|1|L5|G|748
9SPI|1|L5|G|749
9SPI|1|L5|U|750
9SPI|1|L5|G|751
9SPI|1|L5|G|752
*
9SPI|1|L5|U|911
9SPI|1|L5|G|912
9SPI|1|L5|U|913
9SPI|1|L5|U|914
9SPI|1|L5|A|915
9SPI|1|L5|C|916
9SPI|1|L5|A|917
9SPI|1|L5|G|918
9SPI|1|L5|C|919

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a