IL_9SRA_106
3D structure
- PDB id
- 9SRA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CUGAG*(4AC)GAAAAUAG
- Length
- 14 nucleotides
- Bulged bases
- 9SRA|1|1|U|3010
- QA status
- Modified nucleotides: 4AC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRA_106 not in the Motif Atlas
- Homologous match to IL_4V9F_091
- Geometric discrepancy: 0.1565
- The information below is about IL_4V9F_091
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04638.4
- Basepair signature
- cWW-tSH-tHW-tHS-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
9SRA|1|1|C|2868
9SRA|1|1|U|2869
9SRA|1|1|G|2870
9SRA|1|1|A|2871
9SRA|1|1|G|2872
*
9SRA|1|1|4AC|3004
9SRA|1|1|G|3005
9SRA|1|1|A|3006
9SRA|1|1|A|3007
9SRA|1|1|A|3008
9SRA|1|1|A|3009
9SRA|1|1|U|3010
9SRA|1|1|A|3011
9SRA|1|1|G|3012
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BC
- Large ribosomal subunit protein uL3
- Chain BI
- Large ribosomal subunit protein uL13
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