IL_9SRB_108
3D structure
- PDB id
- 9SRB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA and SBDS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CUUAGUAC*GGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRB_108 not in the Motif Atlas
- Geometric match to IL_8GLP_159
- Geometric discrepancy: 0.0943
- The information below is about IL_8GLP_159
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_34443.1
- Basepair signature
- cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
9SRB|1|1|C|2884
9SRB|1|1|U|2885
9SRB|1|1|U|2886
9SRB|1|1|A|2887
9SRB|1|1|G|2888
9SRB|1|1|U|2889
9SRB|1|1|A|2890
9SRB|1|1|C|2891
*
9SRB|1|1|G|2896
9SRB|1|1|G|2897
9SRB|1|1|A|2898
9SRB|1|1|A|2899
9SRB|1|1|C|2900
9SRB|1|1|A|2901
9SRB|1|1|G|2902
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BC
- Large ribosomal subunit protein uL3
- Chain BF
- Large ribosomal subunit protein uL6
- Chain BJ
- Large ribosomal subunit protein uL14
- Chain Bg
- Large ribosomal subunit protein eL40
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