IL_9SRC_070
3D structure
- PDB id
- 9SRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA in PTC conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- UAUAAG*UGAAAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRC_070 not in the Motif Atlas
- Geometric match to IL_9E6Q_072
- Geometric discrepancy: 0.3969
- The information below is about IL_9E6Q_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74322.2
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
9SRC|1|1|U|1747
9SRC|1|1|A|1748
9SRC|1|1|U|1749
9SRC|1|1|A|1750
9SRC|1|1|A|1751
9SRC|1|1|G|1752
*
9SRC|1|1|U|1784
9SRC|1|1|G|1785
9SRC|1|1|A|1786
9SRC|1|1|A|1787
9SRC|1|1|A|1788
9SRC|1|1|G|1789
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain Bd
- Large ribosomal subunit protein eL34
Coloring options: