IL_9SRD_065

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRD_065 not in the Motif Atlas

Geometric match to IL_8GLP_141

Geometric discrepancy: 0.1936

The information below is about IL_8GLP_141

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57267.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

9SRD|1|1|C|1619
9SRD|1|1|C|1620
*
9SRD|1|1|G|1630
9SRD|1|1|C|1631
9SRD|1|1|G|1632

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BB

Large ribosomal subunit protein uL2

Chain BM

Large ribosomal subunit protein eL15