IL_9SRD_069

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

UAUAAG*UGAAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRD_069 not in the Motif Atlas

Geometric match to IL_9E6Q_072

Geometric discrepancy: 0.3938

The information below is about IL_9E6Q_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74322.2

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

9SRD|1|1|U|1747
9SRD|1|1|A|1748
9SRD|1|1|U|1749
9SRD|1|1|A|1750
9SRD|1|1|A|1751
9SRD|1|1|G|1752
*
9SRD|1|1|U|1784
9SRD|1|1|G|1785
9SRD|1|1|A|1786
9SRD|1|1|A|1787
9SRD|1|1|A|1788
9SRD|1|1|G|1789

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain Bd

Large ribosomal subunit protein eL34