IL_9SRD_106

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CUGAG*(4AC)GAAAAUAG

Length

14 nucleotides

Bulged bases

9SRD|1|1|U|3010

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRD_106 not in the Motif Atlas

Homologous match to IL_4V9F_091

Geometric discrepancy: 0.1548

The information below is about IL_4V9F_091

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04638.4

Basepair signature

cWW-tSH-tHW-tHS-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

9SRD|1|1|C|2868
9SRD|1|1|U|2869
9SRD|1|1|G|2870
9SRD|1|1|A|2871
9SRD|1|1|G|2872
*
9SRD|1|1|4AC|3004
9SRD|1|1|G|3005
9SRD|1|1|A|3006
9SRD|1|1|A|3007
9SRD|1|1|A|3008
9SRD|1|1|A|3009
9SRD|1|1|U|3010
9SRD|1|1|A|3011
9SRD|1|1|G|3012

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BC

Large ribosomal subunit protein uL3

Chain BI

Large ribosomal subunit protein uL13