IL_9SS1_048

3D structure

PDB id

9SS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UACAAAG*CAUAAAG

Length

14 nucleotides

Bulged bases

9SS1|1|D1|U|1286

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS1_048 not in the Motif Atlas

Homologous match to IL_6CZR_160

Geometric discrepancy: 0.3022

The information below is about IL_6CZR_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09129.1

Basepair signature

cWW-tWH-tWH-L-R-L-R-tWW-cWW

Number of instances in this motif group

3

Unit IDs

9SS1|1|D1|U|1247
9SS1|1|D1|A|1248
9SS1|1|D1|C|1249
9SS1|1|D1|A|1250
9SS1|1|D1|A|1251
9SS1|1|D1|A|1252
9SS1|1|D1|G|1253
*
9SS1|1|D1|C|1284
9SS1|1|D1|A|1285
9SS1|1|D1|U|1286
9SS1|1|D1|A|1287
9SS1|1|D1|A|1288
9SS1|1|D1|A|1289
9SS1|1|D1|G|1290

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AF

Small ribosomal subunit protein uS7

Chain AH

Small ribosomal subunit protein uS9