IL_9SS2_055

3D structure

PDB id

9SS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State III)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAG*CGGACC

Length

10 nucleotides

Bulged bases

9SS2|1|D1|A|1257, 9SS2|1|D1|A|1280, 9SS2|1|D1|C|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS2_055 not in the Motif Atlas

Homologous match to IL_6CZR_161

Geometric discrepancy: 0.5544

The information below is about IL_6CZR_161

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.1

Basepair signature

cWW-cSS-L-R-cWW

Number of instances in this motif group

3

Unit IDs

9SS2|1|D1|G|1255
9SS2|1|D1|A|1256
9SS2|1|D1|A|1257
9SS2|1|D1|G|1258
*
9SS2|1|D1|C|1277
9SS2|1|D1|G|1278
9SS2|1|D1|G|1279
9SS2|1|D1|A|1280
9SS2|1|D1|C|1281
9SS2|1|D1|C|1282

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AB

Small ribosomal subunit protein uS3

Chain AI

Small ribosomal subunit protein uS10

Chain AM

Small ribosomal subunit protein uS14