IL_9SS2_064

3D structure

PDB id

9SS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State III)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AAGAAG*CCACU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS2_064 not in the Motif Atlas

Geometric match to IL_8B0X_062

Geometric discrepancy: 0.132

The information below is about IL_8B0X_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47352.3

Basepair signature

cWW-cWW-tSH-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

9SS2|1|D1|A|1430
9SS2|1|D1|A|1431
9SS2|1|D1|G|1432
9SS2|1|D1|A|1433
9SS2|1|D1|A|1434
9SS2|1|D1|G|1435
*
9SS2|1|D1|C|1466
9SS2|1|D1|C|1467
9SS2|1|D1|A|1468
9SS2|1|D1|C|1469
9SS2|1|D1|U|1470

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AS

Small ribosomal subunit protein bS20