IL_9SS4_011
3D structure
- PDB id
- 9SS4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGAAC
- Length
- 18 nucleotides
- Bulged bases
- 9SS4|1|D2|A|504, 9SS4|1|D2|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SS4_011 not in the Motif Atlas
- Homologous match to IL_7A0S_009
- Geometric discrepancy: 0.3016
- The information below is about IL_7A0S_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44923.2
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 10
Unit IDs
9SS4|1|D2|G|481
9SS4|1|D2|A|482
9SS4|1|D2|A|483
9SS4|1|D2|C|484
*
9SS4|1|D2|G|496
9SS4|1|D2|A|497
9SS4|1|D2|G|498
9SS4|1|D2|U|499
9SS4|1|D2|G|500
9SS4|1|D2|A|501
9SS4|1|D2|A|502
9SS4|1|D2|A|503
9SS4|1|D2|A|504
9SS4|1|D2|A|505
9SS4|1|D2|G|506
9SS4|1|D2|A|507
9SS4|1|D2|A|508
9SS4|1|D2|C|509
Current chains
- Chain D2
- 23S Ribosomal RNA
Nearby chains
- Chain BV
- Large ribosomal subunit protein uL22
- Chain BX
- Large ribosomal subunit protein uL24
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