IL_9SS4_016
3D structure
- PDB id
- 9SS4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GAAAC*GAGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 9SS4|1|D2|G|801, 9SS4|1|D2|G|805
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SS4_016 not in the Motif Atlas
- Homologous match to IL_7A0S_015
- Geometric discrepancy: 0.1152
- The information below is about IL_7A0S_015
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.2
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
9SS4|1|D2|G|674
9SS4|1|D2|A|675
9SS4|1|D2|A|676
9SS4|1|D2|A|677
9SS4|1|D2|C|678
*
9SS4|1|D2|G|799
9SS4|1|D2|A|800
9SS4|1|D2|G|801
9SS4|1|D2|A|802
9SS4|1|D2|U|803
9SS4|1|D2|A|804
9SS4|1|D2|G|805
9SS4|1|D2|C|806
Current chains
- Chain D2
- 23S Ribosomal RNA
Nearby chains
- Chain BD
- Large ribosomal subunit protein uL4
- Chain BO
- Large ribosomal subunit protein uL15
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