IL_9SS4_021
3D structure
- PDB id
- 9SS4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GGG*CAAUC
- Length
- 8 nucleotides
- Bulged bases
- 9SS4|1|D2|G|776, 9SS4|1|D2|A|788, 9SS4|1|D2|A|789, 9SS4|1|D2|U|790
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SS4_021 not in the Motif Atlas
- Geometric match to IL_9E6Q_032
- Geometric discrepancy: 0.0491
- The information below is about IL_9E6Q_032
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_89509.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
9SS4|1|D2|G|775
9SS4|1|D2|G|776
9SS4|1|D2|G|777
*
9SS4|1|D2|C|787
9SS4|1|D2|A|788
9SS4|1|D2|A|789
9SS4|1|D2|U|790
9SS4|1|D2|C|791
Current chains
- Chain D2
- 23S Ribosomal RNA
Nearby chains
- Chain B7
- Large ribosomal subunit protein bL34
- Chain BB
- Large ribosomal subunit protein uL2
- Chain BD
- Large ribosomal subunit protein uL4
- Chain BV
- Large ribosomal subunit protein uL22
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