IL_9SS4_030

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS4_030 not in the Motif Atlas

Geometric match to IL_8GLP_204

Geometric discrepancy: 0.1839

The information below is about IL_8GLP_204

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87767.3

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9SS4|1|D2|G|875
9SS4|1|D2|C|876
9SS4|1|D2|A|877
9SS4|1|D2|A|878
9SS4|1|D2|G|879
*
9SS4|1|D2|C|898
9SS4|1|D2|A|899
9SS4|1|D2|A|900
9SS4|1|D2|C|901
9SS4|1|D2|C|902

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BP

50S ribosomal protein L16