IL_9SS4_042

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAAAG*CUC

Length

8 nucleotides

Bulged bases

9SS4|1|D2|A|1088

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS4_042 not in the Motif Atlas

Homologous match to IL_1MMS_004

Geometric discrepancy: 0.2796

The information below is about IL_1MMS_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

26

Unit IDs

9SS4|1|D2|G|1087
9SS4|1|D2|A|1088
9SS4|1|D2|A|1089
9SS4|1|D2|A|1090
9SS4|1|D2|G|1091
*
9SS4|1|D2|C|1100
9SS4|1|D2|U|1101
9SS4|1|D2|C|1102

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B9

Large ribosomal subunit protein bL36A

Chain BK

50S ribosomal protein L11