IL_9SS4_045

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9SS4|1|D2|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS4_045 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.1865

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

9SS4|1|D2|C|1208
9SS4|1|D2|U|1209
9SS4|1|D2|G|1210
9SS4|1|D2|C|1211
9SS4|1|D2|G|1212
9SS4|1|D2|A|1213
9SS4|1|D2|A|1214
9SS4|1|D2|G|1215
*
9SS4|1|D2|U|1234
9SS4|1|D2|G|1235
9SS4|1|D2|G|1236
9SS4|1|D2|A|1237
9SS4|1|D2|G|1238

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BT

Large ribosomal subunit protein bL20