IL_9SS4_046
3D structure
- PDB id
- 9SS4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AUAAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SS4_046 not in the Motif Atlas
- Homologous match to IL_7A0S_045
- Geometric discrepancy: 0.1267
- The information below is about IL_7A0S_045
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.4
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
9SS4|1|D2|A|1262
9SS4|1|D2|U|1263
9SS4|1|D2|A|1264
9SS4|1|D2|A|1265
9SS4|1|D2|G|1266
9SS4|1|D2|U|1267
9SS4|1|D2|A|1268
9SS4|1|D2|A|1269
*
9SS4|1|D2|U|2011
9SS4|1|D2|G|2012
9SS4|1|D2|A|2013
9SS4|1|D2|A|2014
9SS4|1|D2|A|2015
9SS4|1|D2|U|2016
9SS4|1|D2|U|2017
Current chains
- Chain D2
- 23S Ribosomal RNA
Nearby chains
- Chain B5
- Large ribosomal subunit protein bL32
- Chain BD
- Large ribosomal subunit protein uL4
- Chain BV
- Large ribosomal subunit protein uL22
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