IL_9SS4_050

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS4_050 not in the Motif Atlas

Homologous match to IL_7A0S_049

Geometric discrepancy: 0.2324

The information below is about IL_7A0S_049

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.2

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9SS4|1|D2|C|1357
9SS4|1|D2|G|1358
9SS4|1|D2|A|1359
9SS4|1|D2|G|1360
9SS4|1|D2|G|1361
*
9SS4|1|D2|C|1370
9SS4|1|D2|G|1371
9SS4|1|D2|U|1372
9SS4|1|D2|A|1373
9SS4|1|D2|G|1374

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B1

Large ribosomal subunit protein bL28

Chain B7

Large ribosomal subunit protein bL34

Chain BB

Large ribosomal subunit protein uL2