IL_9SS4_063

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS4_063 not in the Motif Atlas

Geometric match to IL_9E6Q_063

Geometric discrepancy: 0.0714

The information below is about IL_9E6Q_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74641.3

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

36

Unit IDs

9SS4|1|D2|G|1666
9SS4|1|D2|G|1667
9SS4|1|D2|A|1668
9SS4|1|D2|A|1669
*
9SS4|1|D2|U|1993
9SS4|1|D2|C|1994

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L3

Chain BN

Large ribosomal subunit protein uL14