IL_9SS4_067

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

9SS4|1|D2|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS4_067 not in the Motif Atlas

Geometric match to IL_8B0X_128

Geometric discrepancy: 0.0816

The information below is about IL_8B0X_128

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9SS4|1|D2|U|1712
9SS4|1|D2|A|1713
9SS4|1|D2|U|1714
9SS4|1|D2|G|1715
9SS4|1|D2|U|1716
9SS4|1|D2|A|1717
9SS4|1|D2|G|1718
*
9SS4|1|D2|U|1742
9SS4|1|D2|G|1743
9SS4|1|D2|A|1744
9SS4|1|D2|A|1745
9SS4|1|D2|A|1746

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains