IL_9SS4_071

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

9SS4|1|D2|A|1801, 9SS4|1|D2|C|1816, 9SS4|1|D2|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS4_071 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.0934

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9SS4|1|D2|U|1798
9SS4|1|D2|G|1799
9SS4|1|D2|C|1800
9SS4|1|D2|A|1801
9SS4|1|D2|A|1802
9SS4|1|D2|A|1803
9SS4|1|D2|C|1804
*
9SS4|1|D2|G|1813
9SS4|1|D2|G|1814
9SS4|1|D2|A|1815
9SS4|1|D2|C|1816
9SS4|1|D2|G|1817
9SS4|1|D2|U|1818
9SS4|1|D2|A|1819
9SS4|1|D2|U|1820
9SS4|1|D2|A|1821

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BB

Large ribosomal subunit protein uL2