IL_9SS4_084

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS4_084 not in the Motif Atlas

Homologous match to IL_7A0S_081

Geometric discrepancy: 0.165

The information below is about IL_7A0S_081

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.3

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

47

Unit IDs

9SS4|1|D2|C|2350
9SS4|1|D2|G|2351
9SS4|1|D2|A|2352
9SS4|1|D2|G|2353
*
9SS4|1|D2|C|2364
9SS4|1|D2|G|2365
9SS4|1|D2|A|2366
9SS4|1|D2|G|2367

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B0

Large ribosomal subunit protein bL27

Chain B8

Large ribosomal subunit protein bL35

Chain BR

Large ribosomal subunit protein uL18