IL_9SS4_089

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

9SS4|1|D2|U|2491

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS4_089 not in the Motif Atlas

Homologous match to IL_7A0S_086

Geometric discrepancy: 0.1379

The information below is about IL_7A0S_086

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

26

Unit IDs

9SS4|1|D2|A|2459
9SS4|1|D2|U|2460
9SS4|1|D2|A|2461
*
9SS4|1|D2|U|2489
9SS4|1|D2|G|2490
9SS4|1|D2|U|2491
9SS4|1|D2|U|2492
9SS4|1|D2|U|2493

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BP

50S ribosomal protein L16