IL_9SS4_094

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

9SS4|1|D2|A|2542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS4_094 not in the Motif Atlas

Homologous match to IL_7A0S_091

Geometric discrepancy: 0.096

The information below is about IL_7A0S_091

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_94991.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

17

Unit IDs

9SS4|1|D2|U|2522
9SS4|1|D2|G|2523
*
9SS4|1|D2|C|2540
9SS4|1|D2|A|2541
9SS4|1|D2|A|2542
9SS4|1|D2|G|2543

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B9

Large ribosomal subunit protein bL36A

Chain BM

Large ribosomal subunit protein uL13