IL_9SS4_096
3D structure
- PDB id
- 9SS4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUGAG*CGAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 9SS4|1|D2|G|2780
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SS4_096 not in the Motif Atlas
- Homologous match to IL_7A0S_093
- Geometric discrepancy: 0.1289
- The information below is about IL_7A0S_093
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.4
- Basepair signature
- cWW-tSH-tHW-tHS-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
9SS4|1|D2|C|2636
9SS4|1|D2|U|2637
9SS4|1|D2|G|2638
9SS4|1|D2|A|2639
9SS4|1|D2|G|2640
*
9SS4|1|D2|C|2774
9SS4|1|D2|G|2775
9SS4|1|D2|A|2776
9SS4|1|D2|G|2777
9SS4|1|D2|A|2778
9SS4|1|D2|U|2779
9SS4|1|D2|G|2780
9SS4|1|D2|A|2781
9SS4|1|D2|G|2782
Current chains
- Chain D2
- 23S Ribosomal RNA
Nearby chains
- Chain BC
- 50S ribosomal protein L3
- Chain BM
- Large ribosomal subunit protein uL13
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