IL_9SS4_097
3D structure
- PDB id
- 9SS4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUAGUAC*GGACCG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SS4_097 not in the Motif Atlas
- Homologous match to IL_7A0S_094
- Geometric discrepancy: 0.0878
- The information below is about IL_7A0S_094
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_16458.6
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
9SS4|1|D2|C|2652
9SS4|1|D2|U|2653
9SS4|1|D2|A|2654
9SS4|1|D2|G|2655
9SS4|1|D2|U|2656
9SS4|1|D2|A|2657
9SS4|1|D2|C|2658
*
9SS4|1|D2|G|2663
9SS4|1|D2|G|2664
9SS4|1|D2|A|2665
9SS4|1|D2|C|2666
9SS4|1|D2|C|2667
9SS4|1|D2|G|2668
Current chains
- Chain D2
- 23S Ribosomal RNA
Nearby chains
- Chain BF
- Large ribosomal subunit protein uL6
- Chain BN
- Large ribosomal subunit protein uL14
- Chain FS
- Ribosomal silencing factor RsfS
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