IL_9SS4_107

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGUCCC*GAAAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS4_107 not in the Motif Atlas

Geometric match to IL_8B0X_172

Geometric discrepancy: 0.1014

The information below is about IL_8B0X_172

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18472.5

Basepair signature

cWW-tSW-R-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

9SS4|1|D3|G|23
9SS4|1|D3|G|24
9SS4|1|D3|U|25
9SS4|1|D3|C|26
9SS4|1|D3|C|27
9SS4|1|D3|C|28
*
9SS4|1|D3|G|56
9SS4|1|D3|A|57
9SS4|1|D3|A|58
9SS4|1|D3|A|59
9SS4|1|D3|C|60

Current chains

Chain D3

5S Ribosomal RNA

Nearby chains

Chain BE

Large ribosomal subunit protein uL5

Chain BR

Large ribosomal subunit protein uL18