IL_9SS5_023

3D structure

PDB id

9SS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit in rimM-KO with RsfS (+H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

9SS5|1|D2|U|846, 9SS5|1|D2|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS5_023 not in the Motif Atlas

Geometric match to IL_8B0X_179

Geometric discrepancy: 0.1302

The information below is about IL_8B0X_179

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01742.1

Basepair signature

cWW-L-cWW-R-cWW

Number of instances in this motif group

3

Unit IDs

9SS5|1|D2|A|844
9SS5|1|D2|A|845
9SS5|1|D2|U|846
9SS5|1|D2|U|847
9SS5|1|D2|C|848
*
9SS5|1|D2|G|930
9SS5|1|D2|U|931
9SS5|1|D2|U|932
9SS5|1|D2|A|933
9SS5|1|D2|U|934

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B3

Large ribosomal subunit protein uL30