IL_9SS5_052

3D structure

PDB id

9SS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit in rimM-KO with RsfS (+H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

9SS5|1|D2|U|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS5_052 not in the Motif Atlas

Geometric match to IL_8B0X_115

Geometric discrepancy: 0.0898

The information below is about IL_8B0X_115

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28284.1

Basepair signature

cWW-cWW-tWW-cWW

Number of instances in this motif group

3

Unit IDs

9SS5|1|D2|G|1432
9SS5|1|D2|A|1433
9SS5|1|D2|A|1434
9SS5|1|D2|G|1435
*
9SS5|1|D2|C|1557
9SS5|1|D2|C|1558
9SS5|1|D2|U|1559
9SS5|1|D2|G|1560
9SS5|1|D2|C|1561

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BB

Large ribosomal subunit protein uL2