IL_9SS6_033

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UAGAG*UGGA

Length

9 nucleotides

Bulged bases

9SS6|1|D1|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_033 not in the Motif Atlas

Homologous match to IL_6CZR_141

Geometric discrepancy: 0.1711

The information below is about IL_6CZR_141

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

9SS6|1|D1|U|662
9SS6|1|D1|A|663
9SS6|1|D1|G|664
9SS6|1|D1|A|665
9SS6|1|D1|G|666
*
9SS6|1|D1|U|740
9SS6|1|D1|G|741
9SS6|1|D1|G|742
9SS6|1|D1|A|743

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AE

Small ribosomal subunit protein bS6, fully modified isoform

Chain AN

Small ribosomal subunit protein uS15

Chain AQ

Small ribosomal subunit protein bS18