IL_9SS6_035

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

9SS6|1|D1|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_035 not in the Motif Atlas

Geometric match to IL_8B0X_034

Geometric discrepancy: 0.1115

The information below is about IL_8B0X_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71972.1

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

11

Unit IDs

9SS6|1|D1|U|684
9SS6|1|D1|G|685
9SS6|1|D1|U|686
9SS6|1|D1|A|687
9SS6|1|D1|G|688
*
9SS6|1|D1|C|699
9SS6|1|D1|G|700
9SS6|1|D1|U|701
9SS6|1|D1|A|702
9SS6|1|D1|G|703
9SS6|1|D1|A|704
9SS6|1|D1|G|705
9SS6|1|D1|A|706

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AJ

Small ribosomal subunit protein uS11

Chain D2

Large subunit ribosomal RNA; LSU rRNA