IL_9SS6_088

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

9SS6|1|D2|U|846, 9SS6|1|D2|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_088 not in the Motif Atlas

Geometric match to IL_8B0X_179

Geometric discrepancy: 0.1344

The information below is about IL_8B0X_179

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01742.1

Basepair signature

cWW-L-cWW-R-cWW

Number of instances in this motif group

3

Unit IDs

9SS6|1|D2|A|844
9SS6|1|D2|A|845
9SS6|1|D2|U|846
9SS6|1|D2|U|847
9SS6|1|D2|C|848
*
9SS6|1|D2|G|930
9SS6|1|D2|U|931
9SS6|1|D2|U|932
9SS6|1|D2|A|933
9SS6|1|D2|U|934

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B3

Large ribosomal subunit protein uL30