IL_9SS6_091
3D structure
- PDB id
- 9SS6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome from RimM-KO
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GGGGUAG*CGAAUAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SS6_091 not in the Motif Atlas
- Geometric match to IL_8B0X_090
- Geometric discrepancy: 0.069
- The information below is about IL_8B0X_090
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_94128.1
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9SS6|1|D2|G|856
9SS6|1|D2|G|857
9SS6|1|D2|G|858
9SS6|1|D2|G|859
9SS6|1|D2|U|860
9SS6|1|D2|A|861
9SS6|1|D2|G|862
*
9SS6|1|D2|C|915
9SS6|1|D2|G|916
9SS6|1|D2|A|917
9SS6|1|D2|A|918
9SS6|1|D2|U|919
9SS6|1|D2|A|920
9SS6|1|D2|C|921
Current chains
- Chain D2
- 23S Ribosomal RNA
Nearby chains
- Chain B0
- Large ribosomal subunit protein bL27
- Chain B3
- Large ribosomal subunit protein uL30
- Chain BP
- 50S ribosomal protein L16
- Chain D3
- 5S ribosomal RNA; 5S rRNA
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