IL_9SS6_110

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9SS6|1|D2|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_110 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.1767

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

9SS6|1|D2|C|1208
9SS6|1|D2|U|1209
9SS6|1|D2|G|1210
9SS6|1|D2|C|1211
9SS6|1|D2|G|1212
9SS6|1|D2|A|1213
9SS6|1|D2|A|1214
9SS6|1|D2|G|1215
*
9SS6|1|D2|U|1234
9SS6|1|D2|G|1235
9SS6|1|D2|G|1236
9SS6|1|D2|A|1237
9SS6|1|D2|G|1238

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BT

Large ribosomal subunit protein bL20