IL_9SS6_118

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

9SS6|1|D2|U|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS6_118 not in the Motif Atlas

Geometric match to IL_8B0X_115

Geometric discrepancy: 0.0868

The information below is about IL_8B0X_115

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28284.1

Basepair signature

cWW-cWW-tWW-cWW

Number of instances in this motif group

3

Unit IDs

9SS6|1|D2|G|1432
9SS6|1|D2|A|1433
9SS6|1|D2|A|1434
9SS6|1|D2|G|1435
*
9SS6|1|D2|C|1557
9SS6|1|D2|C|1558
9SS6|1|D2|U|1559
9SS6|1|D2|G|1560
9SS6|1|D2|C|1561

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains