IL_9SUM_018

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

GAAUGUAG*UGUUAUAGC

Length

17 nucleotides

Bulged bases

9SUM|1|A|U|483, 9SUM|1|A|U|507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25001.3

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

4

Unit IDs

9SUM|1|A|G|480
9SUM|1|A|A|481
9SUM|1|A|A|482
9SUM|1|A|U|483
9SUM|1|A|G|484
9SUM|1|A|U|485
9SUM|1|A|A|486
9SUM|1|A|G|487
*
9SUM|1|A|U|502
9SUM|1|A|G|503
9SUM|1|A|U|504
9SUM|1|A|U|505
9SUM|1|A|A|506
9SUM|1|A|U|507
9SUM|1|A|A|508
9SUM|1|A|G|509
9SUM|1|A|C|510

Current chains

Chain A

25S rRNA

Nearby chains

Chain O

Large ribosomal subunit protein eL14 domain-containing protein

Chain U

60S ribosomal protein L20-A